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→Various research using Antigenic cartography
{{quote
|content=Perelson, A. S., & Oster, G. F. (1979). Theoretical studies of clonal selection: Minimal antibody repertoire size and reliability of self-non-self discrimination. Journal of Theoretical Biology, 81(4), 645–670. https://doi.org/10.1016/0022-5193(79)90275-3
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Lapedes, A., & Farber, R. (2001). The geometry of shape space: Application to influenza. Journal of Theoretical Biology, 212(1), 57–69. https://doi.org/10.1006/jtbi.2001.2347
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Klingenberg, C. P. (2020). Walking on Kendall’s Shape Space: Understanding Shape Spaces and Their Coordinate Systems. Evolutionary Biology, 47(4), 334–352. https://doi.org/10.1007/s11692-020-09513-x
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生形貴男. (2011). 生物のかたちの測定と比較. 化石, 89, 39–54. https://doi.org/10.14825/kaseki.89.0_39
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|content=
小杉考司. (2019, August 6). 多次元尺度構成法 その基礎と広がり. 認知心理学会テクニカルレポート. https://cogpsy.jp/wp/wp-content/uploads/COGPSY-TR-002.pdf
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*The followings are standard textbooks
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Nesselroade, J. R., & Cattell, R. B. (1988). Handbook of Multivariate Experimental Psychology (J. R. Nesselroade & R. B. Cattell, Eds.; 2nd ed.). Springer US. https://doi.org/10.1007/978-1-4613-0893-5
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Borg, I., Groenen, P. J. F., & Mair, P. (2018). Applied Multidimensional Scaling and Unfolding. Springer International Publishing. https://doi.org/10.1007/978-3-319-73471-2
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==Antigenic distance==
*Prior to the development of Antigenic cartography by Derek Smith, Smith first proposed the concept of Antigenic distance in this article.
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Smith, D. J., Forrest, S., Ackley, D. H., & Perelson, A. S. (1999). Variable efficacy of repeated annual influenza vaccination. Proceedings of the National Academy of Sciences of the United States of America, 96(24), 14001–14006. https://doi.org/10.1073/pnas.96.24.14001
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*Along with popularization and spread of Antigenic cartography developed in 2004 by Derek Smith, more accurate and plausible measurements of antigenic distance was proposed by Cai et al.
{{quote
|content=Cai, Z., Zhang, T., & Wan, X. F. (2012). Antigenic distance measurements for seasonal influenza vaccine selection. Vaccine, 30(2), 448–453. https://doi.org/10.1016/j.vaccine.2011.10.051
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==Methodology of Antigenic cartography==
*The first propounders of Antigenic Cartography were Smith DJ et al. in 2004 by using hemagluttinin inhibition (HI) assay of influenza AH3N2 viruses.
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*The following is a followings are well documented review reviews of antigenic cartography.
{{quote
|content=Sitaras, I. (2020). Antigenic cartography: Overview and current developments. In Methods in Molecular Biology (Vol. 2123, pp. 61–68). Humana Press Inc. https://doi.org/10.1007/978-1-0716-0346-8_5
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Fouchier, R. A. M., & Smith, D. J. (2010). Use of Antigenic Cartography in Vaccine Seed Strain Selection. Avian Diseases, 54(s1), 220–223. https://doi.org/10.1637/8740-032509-ResNote.1
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{{quote
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伊藤公人. (2011). インフルエンザウイルスの抗原変異とバイオインフォマティクス. ウイルス, 61(1), 3–14. https://doi.org/10.2222/jsv.61.3
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*The following resource and original articles well describe the methodology of antigenic cartography
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An introduction to antigenic cartography. (n.d.). Retrieved September 18, 2023, from https://acorg.github.io/Racmacs/articles/intro-to-antigenic-cartography.html
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Sitaras, I., Kalthoff, D., Beer, M., Peeters, B., & de Jong, M. C. M. (2014). Immune escape mutants of highly pathogenic avian influenza H5N1 selected using polyclonal sera: Identification of key amino acids in the HA protein. PLoS ONE, 9(2). https://doi.org/10.1371/journal.pone.0084628
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{{quote
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Sitaras, I., Spackman, E., de Jong, M. C. M., & Parris, D. J. (2020). Selection and antigenic characterization of immune-escape mutants of H7N2 low pathogenic avian influenza virus using homologous polyclonal sera. Virus Research, 290. https://doi.org/10.1016/j.virusres.2020.198188
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==Various research using Antigenic cartography==
*The followings are actual research using antigenic cartography other than previously mentioned
{{quote
|content=Anderson, C. S., McCall, P. R., Stern, H. A., Yang, H., & Topham, D. J. (2018). Antigenic cartography of H1N1 influenza viruses using sequence-based antigenic distance calculation. BMC Bioinformatics, 19(1). https://doi.org/10.1186/s12859-018-2042-4
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{{quote
|content=Mykytyn, A. Z., Rissmann, M., Kok, A., Rosu, M. E., Schipper, D., Breugem, T. I., van den Doel, P. B., Chandler, F., Bestebroer, T., de Wit, M., van Royen, M. E., Molenkamp, R., Oude Munnink, B. B., de Vries, R. D., GeurtsvanKessel, C., Smith, D. J., Koopmans, M. P. G., Rockx, B., Lamers, M. M., … Haagmans, B. L. (2022). Antigenic cartography of SARS-CoV-2 reveals that Omicron BA.1 and BA.2 are antigenically distinct. Science Immunology, 7(75), 4450. https://doi.org/10.1126/sciimmunol.abq4450
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{{quote
|content=Rössler, A., Netzl, A., Knabl, L., Bante, D., Wilks, S. H., Borena, W., von Laer, D., Smith, D. J., & Kimpel, J. (2023). Characterizing SARS-CoV-2 neutralization profiles after bivalent boosting using antigenic cartography. Nature Communications, 14(1), 5224. https://doi.org/10.1038/s41467-023-41049-4
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